High Throughput Drug Sensitivity Assay and Genomics- Guided Treatment of Patients With Relapsed or Refractory Acute Leukemia
Study Details
Study Description
Brief Summary
This pilot clinical trial studies the feasibility of choosing treatment based on a high throughput ex vivo drug sensitivity assay in combination with mutation analysis for patients with acute leukemia that has returned after a period of improvement (relapsed) or does not respond to treatment (refractory). A high throughput screening assay tests many different drugs individually or in combination that kill leukemia cells in tiny chambers at the same time. High throughput drug sensitivity assay and mutation analysis may help guide the choice most effective for an individual's acute leukemia.
Condition or Disease | Intervention/Treatment | Phase |
---|---|---|
|
N/A |
Detailed Description
PRIMARY OBJECTIVES:
-
To test patient cells in a high throughput assay against individual drugs and drug combinations within 21 days to enable optimal choice of drug combinations for therapy.
-
To test gene expression that reveals activation of druggable pathways or mutations in genes that confer susceptibility to specific agents may also be considered in choice of treatment.
SECONDARY OBJECTIVE:
- To evaluate the response to the chosen therapy.
OUTLINE:
Leukemia cells obtained from blood or bone marrow are analyzed for sensitivity to both individual drugs and drug combinations via high throughput chemotherapy sensitivity assay and next generation sequencing assays. Doctors will then recommend chemotherapy regimens based on the results.
After completion of the chemotherapy regimen, patients are followed up at 2-4 weeks for response, and then every 3 months for 2 years for duration of response and survival.
Study Design
Arms and Interventions
Arm | Intervention/Treatment |
---|---|
Experimental: Treatment (chemosensitivity testing, chemotherapy) Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. |
Other: Chemosensitivity Assay
Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations
Other Names:
Other: Cytology Specimen Collection Procedure
Undergo blood or bone marrow collection
Other Names:
Genetic: Gene Expression Analysis
Analysis of leukemia cell genes to identify possible drug targets
Genetic: Genetic Variation Analysis
Analysis of leukemia cell genes to identify possible drug targets
Other Names:
Drug: In Vitro Sensitivity-Directed Chemotherapy
Receive personalized chemotherapy with one or more of the following drugs:
Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin
|
Outcome Measures
Primary Outcome Measures
- Percentage of Patients we Are Able to Test and Initiate Treatment Within a 21 Day Period [Up to 21 days]
The study will be considered successful (feasibility demonstrated) if it is possible to choose and initiate a combination drug regimen within 21 days in 9 out of 15 patients. With that outcome, there would be 90% confidence that the true feasibility rate is at least 40%.
Secondary Outcome Measures
- Rate of Complete Remission [Up to 2 years]
The secondary objective is to evaluate the response to the chosen therapy. Response will be evaluated using European LeukemiaNet Response Evaluation Criteria in AML (2010 version)
- Survival [Up to 2 years]
Disease free and overall survival data will be assessed by contacting the referring MD or the patient every three months for the first two years.
Eligibility Criteria
Criteria
Inclusion Criteria:
-
Diagnosis of acute leukemia by World Health Organization (WHO) criteria (e.g.-acute myeloid leukemia, acute lymphoblastic leukemia, acute leukemia of ambiguous origin)
-
Either:
-
Relapsed after or refractory to prior treatment with at least two regimens or lines of treatment
-
Prior failure of at least one regimen or line of treatment, with poor cytogenetic or other risk factors, and ineligible for other clinical trials
-
Eastern Cooperative Oncology Group (ECOG) performance status 0 - 3
-
Expectation that we can obtain about 10 million blasts from blood and/or marrow (e.g., circulating blast count of 5,000 or greater or cellular marrow with greater than or equal to 20% blasts)
-
Bilirubin =< 1.5 x upper limit of normal (ULN) unless elevation is thought to be due to Gilbert's syndrome, hemolysis, or hepatic infiltration by the hematologic malignancy
-
Serum glutamic oxaloacetic transaminase (SGOT) (aspartate aminotransferase [AST]) and serum glutamate pyruvate transaminase (SPGT) (alanine aminotransferase [ALT]) =< 2.5 x ULN, unless elevation is thought to be due to hepatic infiltration by the hematologic malignancy
-
Alkaline phosphatase =< 2.5 x ULN, unless elevation is thought to be due to hepatic infiltration by the hematologic malignancy
-
Serum creatinine =< 2.0 mg/dL
-
Informed consent
-
Willing to use contraception when appropriate
-
Expected survival is greater than 100 days
Exclusion Criteria:
-
No other active cancer that requires systemic chemotherapy or radiation
-
Active systemic fungal, bacterial, viral or other infection, unless disease is under treatment with antimicrobials and considered controlled in the opinion of the investigator
-
Significant organ compromise that will increase risk of toxicity or mortality
-
Pregnancy or lactation
Contacts and Locations
Locations
Site | City | State | Country | Postal Code | |
---|---|---|---|---|---|
1 | Fred Hutch/University of Washington Cancer Consortium | Seattle | Washington | United States | 98109 |
Sponsors and Collaborators
- University of Washington
- National Cancer Institute (NCI)
Investigators
- Principal Investigator: Mary-Elizabeth Percival, Fred Hutch/University of Washington Cancer Consortium
Study Documents (Full-Text)
More Information
Publications
None provided.- 9226
- NCI-2015-01299
- 9226
- P30CA015704
- RG1015012
Study Results
Participant Flow
Recruitment Details | |
---|---|
Pre-assignment Detail |
Arm/Group Title | Chemosensitivity Testing |
---|---|
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin |
Period Title: Overall Study | |
STARTED | 34 |
COMPLETED | 34 |
NOT COMPLETED | 0 |
Baseline Characteristics
Arm/Group Title | Chemosensitivity Testing |
---|---|
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin |
Overall Participants | 34 |
Age (Count of Participants) | |
<=18 years |
0
0%
|
Between 18 and 65 years |
23
67.6%
|
>=65 years |
11
32.4%
|
Age (years) [Mean (Full Range) ] | |
Mean (Full Range) [years] |
54
|
Sex: Female, Male (Count of Participants) | |
Female |
17
50%
|
Male |
17
50%
|
Ethnicity (NIH/OMB) (Count of Participants) | |
Hispanic or Latino |
1
2.9%
|
Not Hispanic or Latino |
33
97.1%
|
Unknown or Not Reported |
0
0%
|
Race (NIH/OMB) (Count of Participants) | |
American Indian or Alaska Native |
0
0%
|
Asian |
4
11.8%
|
Native Hawaiian or Other Pacific Islander |
0
0%
|
Black or African American |
1
2.9%
|
White |
29
85.3%
|
More than one race |
0
0%
|
Unknown or Not Reported |
0
0%
|
Region of Enrollment (participants) [Number] | |
United States |
34
100%
|
Outcome Measures
Title | Percentage of Patients we Are Able to Test and Initiate Treatment Within a 21 Day Period |
---|---|
Description | The study will be considered successful (feasibility demonstrated) if it is possible to choose and initiate a combination drug regimen within 21 days in 9 out of 15 patients. With that outcome, there would be 90% confidence that the true feasibility rate is at least 40%. |
Time Frame | Up to 21 days |
Outcome Measure Data
Analysis Population Description |
---|
[Not Specified] |
Arm/Group Title | Chemosensitivity Testing and Treatment Initiation Within 21 Days |
---|---|
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin |
Measure Participants | 34 |
Count of Participants [Participants] |
21
61.8%
|
Title | Rate of Complete Remission |
---|---|
Description | The secondary objective is to evaluate the response to the chosen therapy. Response will be evaluated using European LeukemiaNet Response Evaluation Criteria in AML (2010 version) |
Time Frame | Up to 2 years |
Outcome Measure Data
Analysis Population Description |
---|
Number of complete remissions + complete remissions with incomplete blood counts |
Arm/Group Title | Treatment (Chemosensitivity Testing, Chemotherapy) |
---|---|
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin |
Measure Participants | 34 |
Count of Participants [Participants] |
5
14.7%
|
Title | Survival |
---|---|
Description | Disease free and overall survival data will be assessed by contacting the referring MD or the patient every three months for the first two years. |
Time Frame | Up to 2 years |
Outcome Measure Data
Analysis Population Description |
---|
Overall survival in months from date of study consent |
Arm/Group Title | Treatment (Chemosensitivity Testing, Chemotherapy) |
---|---|
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin |
Measure Participants | 34 |
Mean (Standard Deviation) [months] |
6.91
(7.64)
|
Adverse Events
Time Frame | 5 years | |
---|---|---|
Adverse Event Reporting Description | Non-hematologic toxicities >/= grade 3 were recorded from time of assay-guided therapy administration through 14 days after last administration of study therapy Hospitalizations or prolongation of hospitalizations for protocol-scheduled procedures, blood product transfusions, or for social reasons (i.e. awaiting transport home) were not considered SAEs. And hospitalization or prolongation of hospitalizations for fever and/or infection were considered expected, and not considered SAEs. | |
Arm/Group Title | Chemosensitivity Testing | |
Arm/Group Description | Leukemia cells purified from blood or bone marrow samples are analyzed for sensitivity to individual drugs and drug combination and by next generation sequencing. Chemosensitivity Assay: Lab test in which leukemia cells obtained from blood or bone marrow are tested for sensitivity to 115 drugs individually and in certain combinations Cytology Specimen Collection Procedure: Undergo blood or bone marrow collection Gene Expression Analysis: Analysis of leukemia cell genes to identify possible drug targets Genetic Variation Analysis: Analysis of leukemia cell genes to identify possible drug targets In Vitro Sensitivity-Directed Chemotherapy: Receive personalized chemotherapy with one or more of the following drugs: Afatinib Arsenic trioxide Axitinib Azacitidine Bexarotene Bortezomib Bosutinib Busulfan Cabazitaxel Cabozantinib Carfilzomib Ceritinib Cladribine Clofarabine Crizotinib Cytarabine HCl Dabrafenib Dasatinib Daunorubicin HCl Decitabine Erlotinib Etoposide Everolimus Fludarabine Gefitinib Gemcitabine HCl Hydroxyurea Imatinib Irinotecan Lapatinib Lomustine Melphalan Mercaptopurine Methotrexate Mitoxantrone Nelarabine Nilotinib Paclitaxel Pazopanib Pentostatin Ponatinib Pralatrexate Rapamycin Regorafenib Romidepsin Ruxolitinib Sorafenib Sunitinib Temsirolimus Thioguanine Topotecan HCl Trametinib Tretinoin | |
All Cause Mortality |
||
Chemosensitivity Testing | ||
Affected / at Risk (%) | # Events | |
Total | 32/34 (94.1%) | |
Serious Adverse Events |
||
Chemosensitivity Testing | ||
Affected / at Risk (%) | # Events | |
Total | 11/34 (32.4%) | |
Blood and lymphatic system disorders | ||
Leukocytosis | 1/34 (2.9%) | 1 |
Intermittent Thrombocytopenia | 1/34 (2.9%) | 2 |
General disorders | ||
Pain | 1/34 (2.9%) | 1 |
Immune system disorders | ||
Anaphylaxis | 1/34 (2.9%) | 1 |
Infections and infestations | ||
Enterobacter Cloacae Sepsis | 1/34 (2.9%) | 1 |
Neutropenic fever with Sepsis Physiology | 1/34 (2.9%) | 1 |
Pneumonia | 2/34 (5.9%) | 2 |
Rhizopus Pneumonia | 1/34 (2.9%) | 1 |
Septic Shock | 1/34 (2.9%) | 1 |
Metabolism and nutrition disorders | ||
Tumor Lysis Syndrome | 1/34 (2.9%) | 1 |
Respiratory, thoracic and mediastinal disorders | ||
Dyspnea | 1/34 (2.9%) | 1 |
Hypoxemic Respiratory Failure | 1/34 (2.9%) | 1 |
Pulmonary Edema | 1/34 (2.9%) | 1 |
Respiratory Distress | 1/34 (2.9%) | 1 |
Vascular disorders | ||
Hypotension | 1/34 (2.9%) | 1 |
Other (Not Including Serious) Adverse Events |
||
Chemosensitivity Testing | ||
Affected / at Risk (%) | # Events | |
Total | 26/34 (76.5%) | |
Blood and lymphatic system disorders | ||
Subdural Hematoma | 1/34 (2.9%) | 1 |
Cardiac disorders | ||
Atrial Fibrillation with RVR | 1/34 (2.9%) | 1 |
Heart Failure | 1/34 (2.9%) | 1 |
Gastrointestinal disorders | ||
C. Diff Colitis with Diarrhea | 1/34 (2.9%) | 2 |
Diarrhea | 2/34 (5.9%) | 2 |
General disorders | ||
Pain | 1/34 (2.9%) | 1 |
Infections and infestations | ||
Anorectal Infection | 1/34 (2.9%) | 1 |
Bacteremia Infection | 1/34 (2.9%) | 1 |
Catheter Related Infection | 1/34 (2.9%) | 1 |
Coag Negative Staph Bacteremia | 2/34 (5.9%) | 2 |
Distributive Shock | 1/34 (2.9%) | 1 |
Enterocolitis | 2/34 (5.9%) | 2 |
Eye Infection | 1/34 (2.9%) | 1 |
Febrile Neutropenia | 10/34 (29.4%) | 19 |
Granulicatella Adiacens Bacteremia | 1/34 (2.9%) | 1 |
Invasive Fungal Sinusitis | 1/34 (2.9%) | 1 |
Lung Infection | 3/34 (8.8%) | 3 |
Oral Mucositis | 2/34 (5.9%) | 2 |
Pseudomonas Bacteremia | 1/34 (2.9%) | 1 |
Pneumonia | 2/34 (5.9%) | 2 |
Rothia Mucilaginosa Bacteremia | 1/34 (2.9%) | 1 |
Sepsis | 3/34 (8.8%) | 4 |
Staph Epidermidis Bacteremia | 2/34 (5.9%) | 2 |
Staphylococcus Infection | 1/34 (2.9%) | 1 |
Stenotrophomonas Maltophilia Bacteremia | 1/34 (2.9%) | 1 |
Urinary Tract Infection | 1/34 (2.9%) | 1 |
Injury, poisoning and procedural complications | ||
Fall | 1/34 (2.9%) | 1 |
Investigations | ||
Alanine Aminotransferase Increased | 1/34 (2.9%) | 2 |
Aspartate Aminotransferase Increased | 1/34 (2.9%) | 1 |
Hyperbilirubinemia | 2/34 (5.9%) | 4 |
INR Increased | 1/34 (2.9%) | 1 |
Transaminitis | 1/34 (2.9%) | 1 |
Metabolism and nutrition disorders | ||
Anorexia | 2/34 (5.9%) | 2 |
Hyperglycemia | 1/34 (2.9%) | 1 |
Tumor Lysis Syndrome | 2/34 (5.9%) | 2 |
Nervous system disorders | ||
Syncope | 1/34 (2.9%) | 1 |
Renal and urinary disorders | ||
Acute Kidney Injury | 1/34 (2.9%) | 1 |
Respiratory, thoracic and mediastinal disorders | ||
Hypoxia | 3/34 (8.8%) | 4 |
Pleural Effusion | 1/34 (2.9%) | 1 |
Pulmonary Edema | 2/34 (5.9%) | 2 |
Skin and subcutaneous tissue disorders | ||
Rash Maculopapular | 1/34 (2.9%) | 1 |
Vascular disorders | ||
Central Line Associated DVT | 1/34 (2.9%) | 1 |
Hypertension | 1/34 (2.9%) | 1 |
Hypotension | 1/34 (2.9%) | 1 |
Limitations/Caveats
More Information
Certain Agreements
All Principal Investigators ARE employed by the organization sponsoring the study.
There is NOT an agreement between Principal Investigators and the Sponsor (or its agents) that restricts the PI's rights to discuss or publish trial results after the trial is completed.
Results Point of Contact
Name/Title | Dr. Percival |
---|---|
Organization | University Of Washington |
Phone | 206-606-1320 |
mperciva@seattlecca.org |
- 9226
- NCI-2015-01299
- 9226
- P30CA015704
- RG1015012