SMARTT: Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment Trial
Study Details
Study Description
Brief Summary
The primary aim of this pragmatic trial is to determine the effectiveness of a Whole Genome Sequencing (WGS) Drug Sensitivity Testing (DST) strategy to guide individualised treatment of rifampicin resistant tuberculosis (RR-TB) patients.
The primary objective is to determine the effectiveness of this WGS DST strategy in patients diagnosed with RR-TB. We will additionally perform an exploratory health economics evaluation of both arms, and will determine the feasibility of the WGS DST strategy.
| Condition or Disease | Intervention/Treatment | Phase |
|---|---|---|
|
N/A |
Detailed Description
The trial will be a single blinded randomised controlled, pragmatic, medical device trial evaluating a Whole Genome Sequencing (WGS) Drug Sensitivity Testing (DST) strategy to guide individualised treatment of rifampicin resistant tuberculosis (RR-TB) patients. A total of 248 patients diagnosed with RR-TB in the South African Free State province will by randomised to one of two trial arms. 124 patients will be assigned to the intervention arm, consisting of a WGS DST strategy for diagnosing drug resistance profile and an algorithm-determined individualised RR-TB treatment recommendation. 124 patients will be assigned to the control arm where the diagnosis of Mtb drug resistance and individualisation of RR-TB treatment will happen according to the Standard of Care (SOC) procedures.
Study Design
Arms and Interventions
| Arm | Intervention/Treatment |
|---|---|
| Experimental: WGS DST strategy WGS DST strategy for diagnosing the TB drug resistance profile and an individualised RR-TB treatment recommendation |
Device: WGS DST strategy
WGS DST strategy for diagnosing the TB drug resistance profile and an algorithm-determined individualised RR-TB treatment recommendation
|
| No Intervention: Standard of Care Standard of care diagnosis of the drug resistance profile and individualised treatment |
Outcome Measures
Primary Outcome Measures
- The Effectiveness of a WGS DST strategy for individualisation of RR-TB treatment [Day 0 to month 6 (6 months)]
The effectiveness will be determined by the rate of change in time to positivity (TTP) over 6 months in the Mycobacterial Growth Indicator Tuber (MGIT) system [time from: Day 0 to Week 24]. The effectiveness of the WGS DST strategy will be determined by the rate of change in TTP in liquid media MGIT cultures of sputum samples collected during the first 6 months of treatment. The TTP will be used to determine the change in mycobacterial load using a non-linear mixed effect time-to-event model that provides a longitudinal representation of mycobacterial load (measured as TTP in MGIT) at weeks 2, 3, 4, 5, 6, 7, 8, 12, 16, 20 and 24
Secondary Outcome Measures
- Health economic evaluation of a WGS DST strategy for individualization of RR-TB treatment [Start of treatment to end of treatment (which may vary from 6 months to over 11 months)]
The difference in total cost over the entire treatment period from a patients and health system perspective between a WGS strategy and SOC strategy will be assessed by comparing costing data collected at month 1 of treatment, month 6 of treatment and at the end of treatment.
- Impact of WGS strategy for individualisation of RR-TB treatment on Health related Quality of Life (HRQOL) [Start of treatment to end of treatment (which may vary from 6 months to over 11 months)]
The difference in changes in health relates quality fo life will be assessed by comparing the change in HRQOL over time between patients randomised to the WGS and SOC strategies for individualisation of RR-TB treatment, using results of the EQ-5D-5L questionnaire collected at baseline, month 1, 2, 3, 4, 5, 6 and end of treatment.
Eligibility Criteria
Criteria
Inclusion Criteria:
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Diagnosed with RR-TB
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Diagnosed with pulmonary TB (PTB) or PTB plus extra-pulmonary TB (EPTB)
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≥18 years of age
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Able to sign informed consent
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Not on TB treatment at time of enrolment
Exclusion Criteria:
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Patients diagnosed EPTB without pulmonary involvement
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Patients with TB Meningitis or TB of the bone.
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Has any condition that, in the opinion of the investigator or physician, would preclude provision of informed consent, make participation in the study unsafe, complicate interpretation of study outcome data, interfere with achieving the study objectives or compromise patient safety.
Contacts and Locations
Locations
| Site | City | State | Country | Postal Code | |
|---|---|---|---|---|---|
| 1 | Free State Department of Health Clinics | Bloemfontein | Free State | South Africa |
Sponsors and Collaborators
- Universiteit Antwerpen
- Aurum Institute
- University of Stellenbosch
- University of the Free State
- Free State Department of Health
Investigators
- Principal Investigator: Gavin Churchyard, PhD, MD, Aurum Institute
- Principal Investigator: Annelies Van Rie, PhD, MD, Universiteit Antwerpen
- Principal Investigator: Rob M Warren, PhD, Stellenbosch University, MRC
- Principal Investigator: Salome Charalambous, PhD, Aurum Institute
Study Documents (Full-Text)
None provided.More Information
Publications
None provided.- AUR1-11-248
- T001018N
- 2020-004084-10